{"id":29314,"date":"2025-06-03T08:00:00","date_gmt":"2025-06-03T12:00:00","guid":{"rendered":"https:\/\/michigan.it.umich.edu\/news\/?p=29314"},"modified":"2025-06-02T09:14:31","modified_gmt":"2025-06-02T13:14:31","slug":"intro-to-single-cell-analysis-workshop","status":"publish","type":"post","link":"https:\/\/michigan.it.umich.edu\/news\/2025\/06\/03\/intro-to-single-cell-analysis-workshop\/","title":{"rendered":"Intro to Single-Cell Analysis Workshop"},"content":{"rendered":"<div class=\"wp-block-image\">\n<figure class=\"aligncenter size-full\"><img loading=\"lazy\" decoding=\"async\" width=\"940\" height=\"470\" src=\"https:\/\/michigan.it.umich.edu\/news\/wp-content\/uploads\/2025\/05\/IntroSingleCell.avif\" alt=\"Intro to Single-Cell Analysis Workshop\" class=\"wp-image-29315\" srcset=\"https:\/\/michigan.it.umich.edu\/news\/wp-content\/uploads\/2025\/05\/IntroSingleCell.avif 940w, https:\/\/michigan.it.umich.edu\/news\/wp-content\/uploads\/2025\/05\/IntroSingleCell-300x150.avif 300w, https:\/\/michigan.it.umich.edu\/news\/wp-content\/uploads\/2025\/05\/IntroSingleCell-600x300.avif 600w, https:\/\/michigan.it.umich.edu\/news\/wp-content\/uploads\/2025\/05\/IntroSingleCell-768x384.avif 768w, https:\/\/michigan.it.umich.edu\/news\/wp-content\/uploads\/2025\/05\/IntroSingleCell-665x333.avif 665w\" sizes=\"auto, (max-width: 940px) 100vw, 940px\" \/><figcaption class=\"wp-element-caption\">Image from the <a href=\"https:\/\/www.eventbrite.com\/e\/intro-to-single-cell-analysis-workshop-registration-1371258203199\">Intro to Single-Cell Analysis Workshop registration page<\/a>.<\/figcaption><\/figure>\n<\/div>\n\n\n<div class=\"wp-block-columns alignwide are-vertically-aligned-center is-layout-flex wp-container-core-columns-is-layout-8f761849 wp-block-columns-is-layout-flex\">\n<div class=\"wp-block-column is-vertically-aligned-center is-layout-flow wp-block-column-is-layout-flow\">\n<p class=\"wp-block-paragraph\" style=\"line-height:2\"><strong>Date:<\/strong><br>July 30-August 1<\/p>\n<\/div>\n\n\n\n<div class=\"wp-block-column is-vertically-aligned-center is-layout-flow wp-block-column-is-layout-flow\">\n<p class=\"wp-block-paragraph\" style=\"line-height:2\"><strong>Time:<\/strong><br>9 a.m.-1 p.m.<\/p>\n<\/div>\n\n\n\n<div class=\"wp-block-column is-vertically-aligned-center is-layout-flow wp-block-column-is-layout-flow\">\n<p class=\"wp-block-paragraph\"><strong>Location<\/strong>: <br>Zoom and Slack<\/p>\n<\/div>\n\n\n\n<div class=\"wp-block-column is-layout-flow wp-block-column-is-layout-flow\">\n<div class=\"wp-block-buttons is-layout-flex wp-block-buttons-is-layout-flex\">\n<div class=\"wp-block-button\"><a class=\"wp-block-button__link wp-element-button\" href=\"https:\/\/www.eventbrite.com\/e\/intro-to-single-cell-analysis-workshop-registration-1371258203199\">Register by July 9<\/a><\/div>\n<\/div>\n<\/div>\n<\/div>\n\n\n\n<div class=\"wp-block-uagb-separator uagb-block-1318fdf3\"><div class=\"wp-block-uagb-separator__inner\" style=\"--my-background-image:\"><\/div><\/div>\n\n\n\n<p class=\"wp-block-paragraph\">Are you a researcher comfortable with R\/RStudio and would like to understand the analysis of single-cell RNA-Seq data better? The <a href=\"https:\/\/medresearch.umich.edu\/events\/intro-single-cell-analysis-workshop\/2025-07-30\">Intro to Single-Cell Analysis Workshop<\/a> is for you!<\/p>\n\n\n\n<h2 class=\"wp-block-heading\">Workshop Information<\/h2>\n\n\n\n<p class=\"wp-block-paragraph\">By the end of this workshop, you will be able to:<\/p>\n\n\n\n<ul class=\"wp-block-list\">\n<li>Describe (at a high level) how single-cell samples are sequenced and the strengths of a few popular library preps.<\/li>\n\n\n\n<li>Create and interpret preliminary QC visualizations from a single-cell experiment.<\/li>\n\n\n\n<li>Use PCA and UMAP to create cell-type clusters.<\/li>\n\n\n\n<li>Execute and visualize differential expression across clusters.<\/li>\n\n\n\n<li>Identify marker genes and annotate clusters based on gene expression.<\/li>\n<\/ul>\n\n\n\n<p class=\"wp-block-paragraph\"><strong>Note: This workshop assumes some experience working with R and RStudio. <\/strong>As part of the workshop registration, you can request to be automatically registered for the <strong>free<\/strong> companion workshop <a href=\"https:\/\/www.eventbrite.com\/e\/intro-to-r-and-rstudio-a-2x12-day-virtual-workshop-tickets-1371246648639?aff=oddtdtcreator\"><strong><u>Intro to R &amp; RStudio<\/u><\/strong><\/a><strong> on Wednesday, July 16, and Thursday, July 17, from 9 a.m. to 12 p.m. ET.<\/strong><\/p>\n","protected":false},"excerpt":{"rendered":"<p>A virtual, hands-on workshop over 3 x 1\/2 days for researchers comfortable with R\/RStudio and who would like to better understand the analysis of single-cell RNA-Seq data.<\/p>\n","protected":false},"author":1,"featured_media":29315,"comment_status":"open","ping_status":"closed","sticky":false,"template":"","format":"standard","meta":{"_uag_custom_page_level_css":"","_umich_oidc_access":"","_monsterinsights_skip_tracking":false,"_monsterinsights_sitenote_active":false,"_monsterinsights_sitenote_note":"","_monsterinsights_sitenote_category":0,"_ef_editorial_meta_date_first-draft-date":"","_ef_editorial_meta_paragraph_assignment":"","_ef_editorial_meta_checkbox_needs-photo":"","_ef_editorial_meta_number_word-count":"","footnotes":""},"categories":[1067],"tags":[447,1153],"class_list":["post-29314","post","type-post","status-publish","format-standard","has-post-thumbnail","hentry","category-events","tag-medical-school","tag-workshop"],"uagb_featured_image_src":{"full":["https:\/\/michigan.it.umich.edu\/news\/wp-content\/uploads\/2025\/05\/IntroSingleCell.avif",940,470,false],"thumbnail":["https:\/\/michigan.it.umich.edu\/news\/wp-content\/uploads\/2025\/05\/IntroSingleCell-400x266.avif",400,266,true],"medium":["https:\/\/michigan.it.umich.edu\/news\/wp-content\/uploads\/2025\/05\/IntroSingleCell-300x150.avif",300,150,true],"medium_large":["https:\/\/michigan.it.umich.edu\/news\/wp-content\/uploads\/2025\/05\/IntroSingleCell-768x384.avif",665,333,true],"large":["https:\/\/michigan.it.umich.edu\/news\/wp-content\/uploads\/2025\/05\/IntroSingleCell-600x300.avif",600,300,true],"1536x1536":["https:\/\/michigan.it.umich.edu\/news\/wp-content\/uploads\/2025\/05\/IntroSingleCell.avif",940,470,false],"2048x2048":["https:\/\/michigan.it.umich.edu\/news\/wp-content\/uploads\/2025\/05\/IntroSingleCell.avif",940,470,false],"excerpt-thumbnail":["https:\/\/michigan.it.umich.edu\/news\/wp-content\/uploads\/2025\/05\/IntroSingleCell-200x140.avif",200,140,true],"themonic-thumbnail":["https:\/\/michigan.it.umich.edu\/news\/wp-content\/uploads\/2025\/05\/IntroSingleCell-60x42.avif",60,42,true],"ioslider-thumbnail":["https:\/\/michigan.it.umich.edu\/news\/wp-content\/uploads\/2025\/05\/IntroSingleCell-658x300.avif",658,300,true],"post-thumbnail":["https:\/\/michigan.it.umich.edu\/news\/wp-content\/uploads\/2025\/05\/IntroSingleCell-665x333.avif",665,333,true],"400x250-crop":["https:\/\/michigan.it.umich.edu\/news\/wp-content\/uploads\/2025\/05\/IntroSingleCell-400x250.avif",400,250,true]},"uagb_author_info":{"display_name":"News Staff","author_link":"https:\/\/michigan.it.umich.edu\/news\/author\/mitnewsadm\/"},"uagb_comment_info":0,"uagb_excerpt":"A virtual, hands-on workshop over 3 x 1\/2 days for researchers comfortable with R\/RStudio and who would like to better understand the analysis of single-cell RNA-Seq data.","_links":{"self":[{"href":"https:\/\/michigan.it.umich.edu\/news\/wp-json\/wp\/v2\/posts\/29314","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/michigan.it.umich.edu\/news\/wp-json\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/michigan.it.umich.edu\/news\/wp-json\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/michigan.it.umich.edu\/news\/wp-json\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/michigan.it.umich.edu\/news\/wp-json\/wp\/v2\/comments?post=29314"}],"version-history":[{"count":4,"href":"https:\/\/michigan.it.umich.edu\/news\/wp-json\/wp\/v2\/posts\/29314\/revisions"}],"predecessor-version":[{"id":29319,"href":"https:\/\/michigan.it.umich.edu\/news\/wp-json\/wp\/v2\/posts\/29314\/revisions\/29319"}],"wp:featuredmedia":[{"embeddable":true,"href":"https:\/\/michigan.it.umich.edu\/news\/wp-json\/wp\/v2\/media\/29315"}],"wp:attachment":[{"href":"https:\/\/michigan.it.umich.edu\/news\/wp-json\/wp\/v2\/media?parent=29314"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/michigan.it.umich.edu\/news\/wp-json\/wp\/v2\/categories?post=29314"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/michigan.it.umich.edu\/news\/wp-json\/wp\/v2\/tags?post=29314"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}